1Y0L date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CL, HAN enzyme
related structures by homologous chain: 1AD0, 1PG7, 1UCB
Primary referenceStructural origins of efficient proton abstraction from carbon by a catalytic antibody., Debler EW, Ito S, Seebeck FP, Heine A, Hilvert D, Wilson IA, Proc Natl Acad Sci U S A 2005 Apr 5;102(14):4984-9. Epub 2005 Mar 23. PMID:15788533
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (285 Kb) [Save to disk]
  • Biological Unit Coordinates (1y0l.pdb1.gz) 75 Kb
  • Biological Unit Coordinates (1y0l.pdb2.gz) 74 Kb
  • Biological Unit Coordinates (1y0l.pdb3.gz) 73 Kb
  • Biological Unit Coordinates (1y0l.pdb4.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1Y0L
  • CSU: Contacts of Structural Units for 1Y0L
  • Likely Quarternary Molecular Structure file(s) for 1Y0L
  • Structure Factors (595 Kb)
  • Retrieve 1Y0L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Y0L from S2C, [Save to disk]
  • Re-refined 1y0l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Y0L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Y0L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Y0L, from MSDmotif at EBI
  • Fold representative 1y0l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1y0l_H] [1y0l_F] [1y0l_L] [1y0l] [1y0l_A] [1y0l_B] [1y0l_C] [1y0l_D] [1y0l_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 1Y0L: [IG_like] [IGv ] by SMART
  • Other resources with information on 1Y0L
  • Community annotation for 1Y0L at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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