1YCI	Transcription Regulator, Oxidoreductase	date	Dec 22, 2004
title	Factor Inhibiting Hif-1 Alpha In Complex With N-(Carboxycarb Phenylalanine
authors	M.A.Mcdonough, C.J.Schofield
compound		source
Molecule: Hypoxia-Inducible Factor 1 Alpha Inhibitor Chain: A Synonym: Hypoxia- Inducible Factor Asparagine Hydroxylase, Inhibiting Hif-1, Fih-1; Ec: 1.14.11.16 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Hif1an Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a(+)
symmetry	Space Group: P 41 21 2	R_factor 0.210 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 86.853 86.853 150.519 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	FE2, NDF, SO4	enzyme	Oxidoreductase E.C.1.14.11.16 BRENDA
related structures	by homologous chain: 1H2M, 1IZ3
Gene Ontology	Chain Function Process Component A
Primary reference	Selective inhibition of factor inhibiting hypoxia-inducible factor., McDonough MA, McNeill LA, Tilliet M, Papamicael CA, Chen QY, Banerji B, Hewitson KS, Schofield CJ, J Am Chem Soc 2005 Jun 1;127(21):7680-1. PMID:15913349

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (1yci.pdb1.gz) 115 Kb LPC: Ligand-Protein Contacts for 1YCI CSU: Contacts of Structural Units for 1YCI Likely Quarternary Molecular Structure file(s) for 1YCI Structure Factors (256 Kb) Retrieve 1YCI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YCI from S2C, [Save to disk] Re-refined 1yci structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YCI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YCI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YCI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yci] [1yci_A] SWISS-PROT database: [Q9NWT6] Domain organization of [HIF1N_HUMAN] by SWISSPFAM Domain found in 1YCI: [JmjC ] by SMART

Other resources with information on 1YCI

Community annotation for 1YCI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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