1YF8	Hydrolase	date	Dec 31, 2004
title	Crystal Structure Of Himalayan Mistletoe Rip Reveals The Pre Natural Inhibitor And A New Functionally Active Sugar-Bindi
authors	V.Mishra, S.Bilgrami, R.S.Sharma, P.Kaur, S.Yadav, C.Betzel, C.R.B T.P.Singh
compound		source
Molecule: Beta-Galactoside-Specific Lectin 4 Chain: A Fragment: Residues 1-240 Synonym: Ribosome-Inactivating Protein, Mistletoe Lectin Ec: 3.2.2.22		Organism_scientific: Viscum Album Organism_common: European Mistletoe Organism_taxid: 3972 Strain: Himalayan V.Album
Molecule: Beta-Galactoside-Specific Lectin 4 Chain: B Fragment: Residues 1-255 Synonym: Ribosome-Inactivating Protein, Mistletoe Lectin Ec: 3.2.2.22		Organism_scientific: Viscum Album Organism_common: European Mistletoe Organism_taxid: 3972 Strain: Himalayan V.Album
symmetry	Space Group: P 65 2 2	R_factor 0.234 R_Free 0.287
crystal cell	length a length b length c angle alpha angle beta angle gamma 109.422 109.422 309.798 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	BGC, BMA, GAL, MAN, NAG, P6C	enzyme	Hydrolase E.C.3.2.2.22 BRENDA
related structures	by homologous chain: 1TFM, 2MLL
Gene Ontology	Chain Function Process Component A B
Primary reference	Crystal structure of himalayan mistletoe ribosome-inactivating protein reveals the presence of a natural inhibitor and a new functionally active sugar-binding site., Mishra V, Bilgrami S, Sharma RS, Kaur P, Yadav S, Krauspenhaar R, Betzel C, Voelter W, Babu CR, Singh TP, J Biol Chem 2005 May 27;280(21):20712-21. Epub 2005 Mar 17. PMID:15774467

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (1yf8.pdb1.gz) 83 Kb LPC: Ligand-Protein Contacts for 1YF8 CSU: Contacts of Structural Units for 1YF8 Likely Quarternary Molecular Structure file(s) for 1YF8 Retrieve 1YF8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YF8 from S2C, [Save to disk]

View 1YF8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YF8

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YF8, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yf8_B] [1yf8] [1yf8_A] SWISS-PROT database: [Q6ITZ3] Domain organization of [ML4_VISAL] by SWISSPFAM Domain found in 1YF8: [RICIN ] by SMART

Other resources with information on 1YF8

Community annotation for 1YF8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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