1YU6	Hydrolase	date	Feb 11, 2005
title	Crystal Structure Of The Subtilisin Carlsberg:Omtky3 Complex
authors	J.T.Maynes, M.M.Cherney, M.A.Qasim, M.Laskowski Jr., M.N.G.James
compound		source
Molecule: Subtilisin Carlsberg Chain: A, B Ec: 3.4.21.62		Organism_scientific: Bacillus Licheniformis Organism_taxid: 1402
Molecule: Ovomucoid Chain: C, D Engineered: Yes		Organism_scientific: Meleagris Gallopavo Organism_common: Turkey Organism_taxid: 9103 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet
symmetry	Space Group: C 2 2 21	R_factor 0.191 R_Free 0.205
crystal cell	length a length b length c angle alpha angle beta angle gamma 110.256 100.971 115.785 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.55 Å
ligand	CA	enzyme	Hydrolase E.C.3.4.21.62 BRENDA
related structures	by homologous chain: 1Y1K, 1Y34, 2OVO, 3OVO
Gene Ontology	Chain Function Process Component A, B D, C serine-type endopeptidase in...
Primary reference	Structure of the subtilisin Carlsberg-OMTKY3 complex reveals two different ovomucoid conformations., Maynes JT, Cherney MM, Qasim MA, Laskowski M Jr, James MN, Acta Crystallogr D Biol Crystallogr. 2005 May;61(Pt 5):580-8. Epub 2005, Apr 20. PMID:15858268

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk] Biological Unit Coordinates (1yu6.pdb1.gz) 50 Kb Biological Unit Coordinates (1yu6.pdb2.gz) 49 Kb LPC: Ligand-Protein Contacts for 1YU6 CSU: Contacts of Structural Units for 1YU6 Likely Quarternary Molecular Structure file(s) for 1YU6 Structure Factors (772 Kb) Retrieve 1YU6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1YU6 from S2C, [Save to disk] Re-refined 1yu6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1YU6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1YU6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1YU6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1yu6_B] [1yu6] [1yu6_C] [1yu6_D] [1yu6_A] SWISS-PROT database: [P68390] [P00780] Domain organization of [IOVO_MELGA] [SUBT_BACLI] by SWISSPFAM Domain found in 1YU6: [KAZAL ] by SMART

Other resources with information on 1YU6

Community annotation for 1YU6 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---