1YYC Structural Genomics, Unknown Function date Feb 24, 2005
title Solution Structure Of A Putative Late Embryogenesis Abundant Protein At2g46140.1
authors Center For Eukaryotic Structural Genomics (Cesg), J.Song, R.C. M.S.Lee, J.L.Markley
compound source
Molecule: Putative Late Embryogenesis Abundant Protein
Chain: A
Synonym: Lea Protein
Engineered: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Gene: At2g46140
Expression_system: Cell-Free Synthesis
Other_details: Wheat Germ Cell-Free, In Vitro Expression
methodSolution NMR
related structures by homologous chain: 1XO8
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (886 Kb) [Save to disk]
  • Biological Unit Coordinates (1yyc.pdb1.gz) 44 Kb
  • CSU: Contacts of Structural Units for 1YYC
  • Original NMR restraints for 1YYC from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1YYC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1YYC from S2C, [Save to disk]
    • View 1YYC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1YYC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1YYC, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1yyc_A] [1yyc]
  • SWISS-PROT database: [O82355]
  • Domain organization of [LEA2R_ARATH] by SWISSPFAM
  • Domain found in 1YYC: [WHy ] by SMART
    • Other resources with information on 1YYC
  • Community annotation for 1YYC at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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