1ZAR Transferase date Apr 06, 2005
title Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With A Manganese Ions
authors N.Laronde-Leblanc, T.Guszczynski, T.Copeland, A.Wlodawer
compound source
Molecule: Rio2 Kinase
Chain: A
Engineered: Yes
 Organism_scientific: Archaeoglobus Fulgidus
Organism_taxid: 2234
Gene: Rio2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta-Plyss-De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pdest14
symmetry Space Group: C 1 2 1
R_factor 0.183 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.328 44.589 62.630 90.00 93.88 90.00
method X-Ray Diffractionresolution 1.75 Å
ligand ADP, EDO, MN enzyme
related structures by homologous chain: 1ZAO
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAutophosphorylation of Archaeoglobus fulgidus Rio2 and crystal structures of its nucleotide-metal ion complexes., LaRonde-LeBlanc N, Guszczynski T, Copeland T, Wlodawer A, FEBS J 2005 Jun;272(11):2800-10. PMID:15943813
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (1zar.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 1ZAR
  • CSU: Contacts of Structural Units for 1ZAR
  • Likely Quarternary Molecular Structure file(s) for 1ZAR
  • Structure Factors (479 Kb)
  • Retrieve 1ZAR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ZAR from S2C, [Save to disk]
  • Re-refined 1zar structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1ZAR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ZAR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ZAR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1zar_A] [1zar]
  • SWISS-PROT database: [O30245]
  • Domain organization of [RIO2_ARCFU] by SWISSPFAM
  • Domain found in 1ZAR: [RIO ] by SMART
    • Other resources with information on 1ZAR
  • Community annotation for 1ZAR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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