1A6Y	Transcription Dna	date	Mar 04, 1998
title	Reverba Orphan Nuclear Receptordna Complex
authors	Q.Zhao, S.Khorasanizadeh, F.Rastinejad
compound		source
Molecule: Dna (5'-D(Cpapapcptpapgpgptpcpapcp(5 Papgpgptpcpapg)-3'); Chain: C Engineered: Yes		Synthetic: Yes
Molecule: Dna (5'- D(Cptpgpapcpcptpapgptpgpapcpcptpapgptptp Chain: D Engineered: Yes		Synthetic: Yes
Molecule: Orphan Nuclear Receptor Nr1d1 Chain: A, B Fragment: Dna Binding Domain Consists Of Residues A 101 To 101 To B 164; Synonym: Thyroid Hormone Receptor-Related Protein Rev-Erba- Reverb, Reverba Orphan Nuclear Receptor, V-Erba Related Pro 1; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_plasmid: Pgex
symmetry	Space Group: P 1	R_factor 0.192 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 38.670 45.690 47.950 75.16 80.64 85.58
method	X-Ray Diffraction	resolution	2.30 Å
ligand	5IU, ZN	enzyme
related structures	by homologous chain: 1DSZ, 1GA5
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structural elements of an orphan nuclear receptor-DNA complex., Zhao Q, Khorasanizadeh S, Miyoshi Y, Lazar MA, Rastinejad F, Mol Cell 1998 May;1(6):849-61. PMID:9660968

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk] Biological Unit Coordinates (1a6y.pdb1.gz) 47 Kb LPC: Ligand-Protein Contacts for 1A6Y CSU: Contacts of Structural Units for 1A6Y Likely Quarternary Molecular Structure file(s) for 1A6Y Structure Factors (90 Kb) Retrieve 1A6Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1A6Y from S2C, [Save to disk] Re-refined 1a6y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1A6Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1A6Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1A6Y, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1a6ya_, region A [Jmol] [rasmolscript] [script source]     - Domain d1a6yb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1a6y_D] [1a6y_C] [1a6y] [1a6y_B] [1a6y_A] SWISS-PROT database: [P20393] Domain organization of [NR1D1_HUMAN] by SWISSPFAM Domain found in 1A6Y: [ZnF_C4 ] by SMART

Other resources with information on 1A6Y

Community annotation for 1A6Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---