1AFH Lipid Binding Protein date Mar 07, 1997
title Lipid Transfer Protein From Maize Seedlings, Nmr, 15 Structu
authors J.Gomar, M.C.Petit, P.Sodano, D.Sy, D.Marion, J.C.Kader, F.Vovelle
compound source
Molecule: Maize Nonspecific Lipid Transfer Protein
Chain: A
 Organism_scientific: Zea Mays
Organism_taxid: 4577
Organ: Seeds
methodSolution NMR
related structures by homologous chain: 1BV2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and lipid binding of a nonspecific lipid transfer protein extracted from maize seeds., Gomar J, Petit MC, Sodano P, Sy D, Marion D, Kader JC, Vovelle F, Ptak M, Protein Sci 1996 Apr;5(4):565-77. PMID:8845747
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (315 Kb) [Save to disk]
  • Biological Unit Coordinates (1afh.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1AFH
  • Retrieve 1AFH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AFH from S2C, [Save to disk]
    • View 1AFH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AFH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AFH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1afh__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1afh_A] [1afh]
  • SWISS-PROT database: [P19656]
  • Domain organization of [NLTP_MAIZE] by SWISSPFAM
  • Domain found in 1AFH: [AAI ] by SMART
    • Other resources with information on 1AFH
  • Community annotation for 1AFH at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1AFH from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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