1AXU Dna date Oct 21, 1997
title Solution Nmr Structure Of The [Ap]Dg Adduct Opposite Da In A Duplex, Nmr, 9 Structures
authors Z.Gu, A.A.Gorin, R.Krishnasami, B.E.Hingerty, A.K.Basu, S.Broyde,
compound source
Molecule: Dna Duplex D(Ccatc-[Ap]G-Ctacc)D(Ggtagagatgg)
Chain: A
Engineered: Yes
Other_details: N1 Atom Of Ap Linked To C8 Atom Of Dg6
 Synthetic: Yes

Molecule: Dna Duplex D(Ccatc-[Ap]G-Ctacc)D(Ggtagagatgg)
Chain: B
Engineered: Yes
Other_details: N1 Atom Of Ap Linked To C8 Atom Of Dg6
Synthetic: Yes
methodSolution NMR
ligand AP enzyme
Primary referenceSolution structure of the N-(deoxyguanosin-8-yl)-1-aminopyrene ([AP]dG) adduct opposite dA in a DNA duplex., Gu Z, Gorin A, Krishnasamy R, Hingerty BE, Basu AK, Broyde S, Patel DJ, Biochemistry 1999 Aug 17;38(33):10843-54. PMID:10451381
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (1axu.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 1AXU
  • CSU: Contacts of Structural Units for 1AXU
  • Original NMR restraints for 1AXU from PDB
  • Retrieve 1AXU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AXU from S2C, [Save to disk]
    • View 1AXU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AXU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AXU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1axu_B] [1axu] [1axu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1AXU
  • Community annotation for 1AXU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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