1AYM HUMAN RHINOVIRUS 16 COAT PROTEIN AT HIGH RESOLUTION date
authors Hadfield, A.T., Rossmann, M.G.
compound source
symmetry
R_factor
R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.15
ligand DAO, MYR, ZN enzyme
note 1AYM is a representative structure
related structures by homologous chain: 1ND2
Gene
Ontology
ChainFunctionProcessComponent
1, 3, 2


4


Primary referenceThe refined structure of human rhinovirus 16 at 2.15 A resolution: implications for the viral life cycle., Hadfield AT, Lee W, Zhao R, Oliveira MA, Minor I, Rueckert RR, Rossmann MG, Structure 1997 Mar 15;5(3):427-41. PMID:9083115
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (1aym.pdb1.gz) 8165 Kb
  • LPC: Ligand-Protein Contacts for 1AYM
  • CSU: Contacts of Structural Units for 1AYM
  • Likely Quarternary Molecular Structure file(s) for 1AYM
  • Structure Factors (11982 Kb)
  • Retrieve 1AYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1AYM from S2C, [Save to disk]
    • View 1AYM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1AYM
  • VIPERdb: visual, structural and computational analysis of 1AYM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1AYM, from MSDmotif at EBI
  • Genome occurence of 1AYM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1aym1_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d1aym3_, region 3 [Jmol] [rasmolscript] [script source]
        - Domain d1aym.1, region 4:,2 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1aym_1] [1aym_4] [1aym_3] [1aym_2] [1aym]
  • SWISS-PROT database: [Q82122] [P23008]
  • Belongs to the poliovirus 2b viroporin (2b viroporin) family according to TCDB.
  • Domain organization of [POLG_HRV16] [POLG_HRV1A] by SWISSPFAM
    • Other resources with information on 1AYM
  • Community annotation for 1AYM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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