1B66 Tetrahydrobiopterin Biosynthesis date Jan 20, 1999
title 6-Pyruvoyl Tetrahydropterin Synthase
authors T.Ploom, B.Thoeny, J.Yim, S.Lee, H.Nar, W.Leimbacher, R.Huber, J.Ri G.Auerbach
compound source
Molecule: 6-Pyruvoyl Tetrahydropterin Synthase
Chain: A, B
Ec: 4.6.1.10
Engineered: Yes
Organism_scientific: Rattus Rattus
Organism_common: Black Rat
Organism_taxid: 10117
Organ: Liver
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 3 2 1
R_factor 0.227 R_Free 0.258
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.270 120.270 61.250 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand BIO, ZN enzyme Lyase E.C.4.6.1.10 BRENDA
note 1B66 is a representative structure
related structures by homologous chain: 1B6Z
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystallographic and kinetic investigations on the mechanism of 6-pyruvoyl tetrahydropterin synthase., Ploom T, Thony B, Yim J, Lee S, Nar H, Leimbacher W, Richardson J, Huber R, Auerbach G, J Mol Biol 1999 Feb 26;286(3):851-60. PMID:10024455
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1b66.pdb1.gz) 147 Kb
  • Biological Unit Coordinates (1b66.pdb2.gz) 74 Kb
  • Biological Unit Coordinates (1b66.pdb3.gz) 74 Kb
  • LPC: Ligand-Protein Contacts for 1B66
  • CSU: Contacts of Structural Units for 1B66
  • Likely Quarternary Molecular Structure file(s) for 1B66
  • Retrieve 1B66 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B66 from S2C, [Save to disk]
  • View 1B66 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1B66
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B66, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b66a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1b66b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b66] [1b66_A] [1b66_B]
  • SWISS-PROT database: [P27213]
  • Domain organization of [PTPS_RAT] by SWISSPFAM
  • Other resources with information on 1B66
  • Community annotation for 1B66 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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