1B75 Rna Binding Protein date Jan 27, 1999
title Solution Structure Of Ribosomal Protein L25 From Escherichia
authors M.Stoldt, J.Woehnert, M.Goerlach, L.R.Brown
compound source
Molecule: Protein (50s Ribosomal Protein L25)
Chain: A
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Strain: Mre 600
methodSolution NMR
related structures by homologous chain: 1D6K
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases., Stoldt M, Wohnert J, Gorlach M, Brown LR, EMBO J 1998 Nov 2;17(21):6377-84. PMID:9799245
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (261 Kb) [Save to disk]
  • Biological Unit Coordinates (1b75.pdb1.gz) 27 Kb
  • CSU: Contacts of Structural Units for 1B75
  • Original NMR restraints for 1B75 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1B75 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1B75 from S2C, [Save to disk]
    • View 1B75 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1B75
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1B75, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1b75a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1b75] [1b75_A]
  • SWISS-PROT database: [P68919]
  • Domain organization of [RL25_ECOLI] by SWISSPFAM
    • Other resources with information on 1B75
  • Community annotation for 1B75 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1B75 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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