1BDD Immunoglobulin-Binding Protein date Jun 28, 1996
title Staphylococcus Aureus Protein A, Immunoglobulin-Binding B Do Minimized Average Structure
authors H.Gouda, H.Torigoe, A.Saito, M.Sato, Y.Arata, I.Shimada
compound source
Molecule: Staphylococcus Aureus Protein A
Chain: A
Fragment: B Domain
Engineered: Yes
 Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Gene: Synthetic Gene
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pprafw1
methodSolution NMR
related structures by homologous chain: 1BDC, 1ZDD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional solution structure of the B domain of staphylococcal protein A: comparisons of the solution and crystal structures., Gouda H, Torigoe H, Saito A, Sato M, Arata Y, Shimada I, Biochemistry 1992 Oct 13;31(40):9665-72. PMID:1390743
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (1bdd.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1BDD
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1BDD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BDD from S2C, [Save to disk]
    • View 1BDD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BDD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BDD, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bdd__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bdd] [1bdd_A]
  • SWISS-PROT database: [P38507]
  • Domain organization of [SPA_STAAU] by SWISSPFAM
    • Other resources with information on 1BDD
  • Community annotation for 1BDD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1BDD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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