1BJ7 Allergen date Jul 02, 1998
title Bovine Lipocalin Allergen Bos D 2
authors J.Rouvinen
compound source
Molecule: D 2
Chain: A
Synonym: Dander Major Allergen Bda20, Dermal Allergen Bda20
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.000 55.600 77.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProbing the molecular basis of allergy. three-dimensional structure of the bovine lipocalin allergen Bos d 2., Rouvinen J, Rautiainen J, Virtanen T, Zeiler T, Kauppinen J, Taivainen A, Mantyjarvi R, J Biol Chem 1999 Jan 22;274(4):2337-43. PMID:9891000
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1bj7.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1BJ7
  • Likely Quarternary Molecular Structure file(s) for 1BJ7
  • Structure Factors (129 Kb)
  • Retrieve 1BJ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BJ7 from S2C, [Save to disk]
  • Re-refined 1bj7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1BJ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BJ7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BJ7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bj7__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bj7_A] [1bj7]
  • SWISS-PROT database: [Q28133]
  • Domain organization of [ALL2_BOVIN] by SWISSPFAM
    • Other resources with information on 1BJ7
  • Community annotation for 1BJ7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science