1BMP Transforming Growth Factor date Dec 14, 1995
title Bone Morphogenetic Protein-7
authors D.L.Griffith, D.L.Scott
compound source
Molecule: Bone Morphogenetic Protein-7
Chain: A
Synonym: Osteogenic Protein-1, Hop-1, Bmp-7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Organ: Ovary
Gene: Hop-1 Cdna
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_gene: Hop-1 Cdna
Other_details: Reference, T.K. Sampath, Et Al. (1992) J. Bi 267, 20452-20362
symmetry Space Group: P 32 2 1
R_factor 0.227 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.460 99.460 42.090 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
related structures by homologous chain: 1M4U
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThree-dimensional structure of recombinant human osteogenic protein 1: structural paradigm for the transforming growth factor beta superfamily., Griffith DL, Keck PC, Sampath TK, Rueger DC, Carlson WD, Proc Natl Acad Sci U S A 1996 Jan 23;93(2):878-83. PMID:8570652
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1bmp.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 1BMP
  • Likely Quarternary Molecular Structure file(s) for 1BMP
  • Retrieve 1BMP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BMP from S2C, [Save to disk]
  • View 1BMP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BMP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BMP, from MSDmotif at EBI
  • Genome occurence of 1BMP's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bmp__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bmp] [1bmp_A]
  • SWISS-PROT database: [P18075]
  • Domain organization of [BMP7_HUMAN] by SWISSPFAM
  • Domain found in 1BMP: [TGFB ] by SMART
  • Other resources with information on 1BMP
  • Community annotation for 1BMP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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