1BN6 Hydrolase date Jul 31, 1998
title Haloalkane Dehalogenase From A Rhodococcus Species
authors J.Newman, T.S.Peat, R.Richard, L.Kan, P.E.Swanson, J.A.Affholter, I.H.Holmes, J.F.Schindler, C.J.Unkefer, T.C.Terwilliger
compound source
Molecule: Haloalkane Dehalogenase
Chain: A
Ec: 3.8.1.5
Engineered: Yes
Organism_scientific: Rhodococcus Sp.
Organism_taxid: 1831
Atcc: Atcc 55388
Collection: Atcc 55388
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.167 R_Free 0.174
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.520 79.970 43.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand
enzyme Hydrolase E.C.3.8.1.5 BRENDA
related structures by homologous chain: 1BN7, 1CQW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHaloalkane dehalogenases: structure of a Rhodococcus enzyme., Newman J, Peat TS, Richard R, Kan L, Swanson PE, Affholter JA, Holmes IH, Schindler JF, Unkefer CJ, Terwilliger TC, Biochemistry 1999 Dec 7;38(49):16105-14. PMID:10587433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1bn6.pdb1.gz) 55 Kb
  • CSU: Contacts of Structural Units for 1BN6
  • Likely Quarternary Molecular Structure file(s) for 1BN6
  • Structure Factors (378 Kb)
  • Retrieve 1BN6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BN6 from S2C, [Save to disk]
  • Re-refined 1bn6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1BN6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BN6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1BN6 from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BN6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bn6a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bn6_A] [1bn6]
  • SWISS-PROT database: [P59336]
  • Domain organization of [DHAA_RHOSD] by SWISSPFAM
  • Other resources with information on 1BN6
  • Community annotation for 1BN6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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