1BQB Hydrolase date Jul 14, 1998
title Aureolysin, Staphylococcus Aureus Metalloproteinase
authors F.J.Medrano, A.Banbula, J.Potempa, J.Travis, W.Bode
compound source
Molecule: Protein (Aureolysin)
Chain: A
Synonym: Staphylococcus Aureus Metalloproteinase
Ec: 3.4.24.27
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Strain: V8-Bc10
symmetry Space Group: P 21 21 21
R_factor 0.176 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.700 79.500 100.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.72 Å
ligand CA, ZN enzyme Hydrolase E.C.3.4.24.27 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAmino-acid sequence and three-dimensional structure of the Staphylococcus aureus metalloproteinase at 1.72 A resolution., Banbula A, Potempa J, Travis J, Fernandez-Catalan C, Mann K, Huber R, Bode W, Medrano F, Structure 1998 Sep 15;6(9):1185-93. PMID:9753696
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1bqb.pdb1.gz) 50 Kb
  • LPC: Ligand-Protein Contacts for 1BQB
  • CSU: Contacts of Structural Units for 1BQB
  • Likely Quarternary Molecular Structure file(s) for 1BQB
  • Retrieve 1BQB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BQB from S2C, [Save to disk]
  • View 1BQB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BQB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BQB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bqba_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bqb] [1bqb_A]
  • SWISS-PROT database: [P81177]
  • Domain organization of [AURE_STAAU] by SWISSPFAM
  • Other resources with information on 1BQB
  • Community annotation for 1BQB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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