1BSM Oxidoreductase date Aug 28, 1998
title P.Shermanii Sod(Fe+3) 140k Ph8
authors M.Schmidt
compound source
Molecule: Superoxide Dismutase
Chain: A, B
Ec: 1.15.1.1
 Organism_scientific: Propionibacterium Freudenreichii Subsp Shermanii;
Organism_taxid: 1752
Strain: Pz3
Atcc: German Collection Of Microorganisms (Dsm) 4902
Collection: German Collection Of Microorganisms (Dsm) 4902
Cellular_location: Cytoplasm
symmetry Space Group: C 2 2 21
R_factor 0.205 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.181 84.319 107.035 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand FE enzyme Oxidoreductase E.C.1.15.1.1 BRENDA
related structures by homologous chain: 1AVM
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • superoxide dismutase activit...


    • Primary referenceManipulating the coordination mumber of the ferric iron within the cambialistic superoxide dismutase of Propionibacterium shermanii by changing the pH-value A crystallographic analysis., Schmidt M, Eur J Biochem 1999 May;262(1):117-27. PMID:10231372
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (1bsm.pdb1.gz) 150 Kb
  • LPC: Ligand-Protein Contacts for 1BSM
  • CSU: Contacts of Structural Units for 1BSM
  • Likely Quarternary Molecular Structure file(s) for 1BSM
  • Retrieve 1BSM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BSM from S2C, [Save to disk]
    • View 1BSM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1BSM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1BSM 1BSMA 1BSMB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BSM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bsma1, region A:1-86 [Jmol] [rasmolscript] [script source]
        - Domain d1bsma2, region A:87-201 [Jmol] [rasmolscript] [script source]
        - Domain d1bsmb1, region B:1-86 [Jmol] [rasmolscript] [script source]
        - Domain d1bsmb2, region B:87-201 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bsm_A] [1bsm_B] [1bsm]
  • SWISS-PROT database: [P80293]
  • Domain organization of [SODM_PROFR] by SWISSPFAM
    • Other resources with information on 1BSM
  • Community annotation for 1BSM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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