1BVD Oxygen Storage date Dec 16, 1994
title Structure Of A Biliverdin Apomyoglobin Complex (Form B) At 9
authors U.G.Wagner, N.Mueller, W.Schmitzberger, H.Falk, C.Kratky
compound source
Molecule: Apomyoglobin
Chain: A
Other_details: Crystal Form B
Organism_scientific: Physeter Catodon
Organism_common: Sperm Whale
Organism_taxid: 9755
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.799 50.604 74.651 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand BLA enzyme
related structures by homologous chain: 1DWT, 1J3F
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure determination of the biliverdin apomyoglobin complex: crystal structure analysis of two crystal forms at 1.4 and 1.5 A resolution., Wagner UG, Muller N, Schmitzberger W, Falk H, Kratky C, J Mol Biol 1995 Mar 24;247(2):326-37. PMID:7707378
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1bvd.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1BVD
  • CSU: Contacts of Structural Units for 1BVD
  • Likely Quarternary Molecular Structure file(s) for 1BVD
  • Retrieve 1BVD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BVD from S2C, [Save to disk]
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  • Visual 3D analysis of 1BVD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1BVD from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BVD, from MSDmotif at EBI
  • Genome occurence of 1BVD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bvd__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bvd_A] [1bvd]
  • SWISS-PROT database: [P02185]
  • Domain organization of [MYG_PHYCA] by SWISSPFAM
  • Other resources with information on 1BVD
  • Community annotation for 1BVD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1BVD from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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