1BWP Hydrolase date Sep 27, 1998
title Probing The Substrate Specificity Of The Intracellular Brain Activating Factor Acetylhydrolase
authors Y.S.Ho, P.J.Sheffield, J.Masuyama, H.Arai, J.Li, J.Aoki, K.Inoue, U.Derewenda, Z.Derewenda
compound source
Molecule: Platelet-Activating Factor Acetylhydrolase
Chain: A
Synonym: Pafah
Ec: 3.1.1.47
Engineered: Yes
Mutation: Yes
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Organ: Brain
Tissue: Brain
Cellular_location: Cytoplasm
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 31 2 1
R_factor 0.209 R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.800 81.800 72.980 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand
enzyme Hydrolase E.C.3.1.1.47 BRENDA
related structures by homologous chain: 1FXW, 1WAB
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceProbing the substrate specificity of the intracellular brain platelet-activating factor acetylhydrolase., Ho YS, Sheffield PJ, Masuyama J, Arai H, Li J, Aoki J, Inoue K, Derewenda U, Derewenda ZS, Protein Eng 1999 Aug;12(8):693-700. PMID:10469831
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1bwp.pdb1.gz) 72 Kb
  • CSU: Contacts of Structural Units for 1BWP
  • Likely Quarternary Molecular Structure file(s) for 1BWP
  • Retrieve 1BWP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1BWP from S2C, [Save to disk]
  • View 1BWP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1BWP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1BWP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1bwp__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1bwp_A] [1bwp]
  • SWISS-PROT database: [Q29460]
  • Domain organization of [PA1B3_BOVIN] by SWISSPFAM
  • Other resources with information on 1BWP
  • Community annotation for 1BWP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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