1C11 Dna date Jul 15, 1998
title Intercalated D(Tcccgtttcca) Dimer, Nmr, 7 Structures
authors J.Gallego, S.H.Chou, B.R.Reid
compound source
Molecule: Dna (5'-D(Tpcpcpcpgptptptpcpcpa)-3')
Chain: A, B
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
Primary referenceCentromeric pyrimidine strands fold into an intercalated motif by forming a double hairpin with a novel T:G:G:T tetrad: solution structure of the d(TCCCGTTTCCA) dimer., Gallego J, Chou SH, Reid BR, J Mol Biol 1997 Nov 7;273(4):840-56. PMID:9367776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (1c11.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1C11
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1C11 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1C11 from S2C, [Save to disk]
    • View 1C11 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1C11
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1C11, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1c11_B] [1c11] [1c11_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1C11
  • Community annotation for 1C11 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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