1CF2	Oxidoreductase	date	Mar 24, 1999
title	Three-Dimensional Structure Of D-Glyceraldehyde-3-Phosphate Dehydrogenase From The Hyperthermophilic Archaeon Methanoth Fervidus
authors	C.Charron, F.Talfournier, M.N.Isuppov, G.Branlant, J.A.Littlechi B.Vitoux, A.Aubry
compound		source
Molecule: Protein (Glyceraldehyde-3-Phosphate Dehydrogenase Chain: P, R, O, Q Ec: 1.2.1.12 Engineered: Yes		Organism_scientific: Methanothermus Fervidus Organism_taxid: 2180 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Hb101
symmetry	Space Group: P 21 21 2	R_factor 0.194 R_Free 0.257
crystal cell	length a length b length c angle alpha angle beta angle gamma 136.660 153.280 74.920 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	NAP, SO4	enzyme	Oxidoreductase E.C.1.2.1.12 BRENDA
Gene Ontology	Chain Function Process Component Q, O, R, P
Primary reference	Crystallization and preliminary X-ray diffraction studies of D-glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic archaeon Methanothermus fervidus., Charron C, Talfournier F, Isupov MN, Branlant G, Littlechild JA, Vitoux B, Aubry A, Acta Crystallogr D Biol Crystallogr 1999 Jul;55 ( Pt 7):1353-5. PMID:10393306

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk] Biological Unit Coordinates (1cf2.pdb1.gz) 230 Kb LPC: Ligand-Protein Contacts for 1CF2 CSU: Contacts of Structural Units for 1CF2 Likely Quarternary Molecular Structure file(s) for 1CF2 Structure Factors (658 Kb) Retrieve 1CF2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1CF2 from S2C, [Save to disk] Re-refined 1cf2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1CF2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1CF2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1CF2, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1cf2o1, region O:1-138,O:304-336 [Jmol] [rasmolscript] [script source]     - Domain d1cf2o2, region O:139-303 [Jmol] [rasmolscript] [script source]     - Domain d1cf2p1, region P:1-138,P:304-336 [Jmol] [rasmolscript] [script source]     - Domain d1cf2p2, region P:139-303 [Jmol] [rasmolscript] [script source]     - Domain d1cf2q1, region Q:1-138,Q:304-336 [Jmol] [rasmolscript] [script source]     - Domain d1cf2q2, region Q:139-303 [Jmol] [rasmolscript] [script source]     - Domain d1cf2r1, region R:1-138,R:304-336 [Jmol] [rasmolscript] [script source]     - Domain d1cf2r2, region R:139-303 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1cf2_Q] [1cf2_P] [1cf2_O] [1cf2] [1cf2_R] SWISS-PROT database: [P10618] Domain organization of [G3P_METFE] by SWISSPFAM Domain found in 1CF2: [Gp_dh_N ] by SMART

Other resources with information on 1CF2

Community annotation for 1CF2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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