1CW5 Toxin date Aug 25, 1999
title Solution Structure Of Carnobacteriocin B2
authors Y.Wang, M.E.Henz, N.L.F.Gallagher, S.Chai, L.Z.Yan, A.C.Gibbs, M.E D.S.Wishart, J.C.Vederas
compound source
Molecule: Type Iia Bacteriocin Carnobacteriocin B2
Chain: A
 Organism_scientific: Carnobacterium Maltaromaticum
Organism_taxid: 2751
methodSolution NMR
related structures by homologous chain: 1RY3, 2LEU
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of carnobacteriocin B2 and implications for structure-activity relationships among type IIa bacteriocins from lactic acid bacteria., Wang Y, Henz ME, Gallagher NL, Chai S, Gibbs AC, Yan LZ, Stiles ME, Wishart DS, Vederas JC, Biochemistry 1999 Nov 23;38(47):15438-47. PMID:10569926
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (1cw5.pdb1.gz) 12 Kb
  • CSU: Contacts of Structural Units for 1CW5
  • Original NMR restraints for 1CW5 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1CW5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1CW5 from S2C, [Save to disk]
    • View 1CW5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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    • Visual 3D analysis of 1CW5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1CW5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1cw5a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1cw5] [1cw5_A]
  • SWISS-PROT database: [P38580]
  • Belongs to the pediocin (pediocin) family according to TCDB.
  • Domain organization of [CBB2_CARML] by SWISSPFAM
    • Other resources with information on 1CW5
  • Community annotation for 1CW5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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