1CZY	Apoptosis	date	Sep 07, 1999
title	Crystal Structure Of The Complex Between The Traf Domain Of Traf2 And An Lmp1 Binding Peptide
authors	H.Ye, Y.C.Park, M.Kreishman, E.Kieff, H.Wu
compound		source
Molecule: Tumor Necrosis Factor Receptor Associated Protein Chain: A, B, C Fragment: Traf Domain Synonym: Traf2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24d
Molecule: Latent Membrane Protein 1 Chain: D, E Fragment: Traf2-Binding Region Synonym: Lmp1 Engineered: Yes		Synthetic: Yes Other_details: This Peptide Was Chemically Synthesized. The Of This Peptide Naturally Occurs In Humans (Homo Sapiens)
symmetry	Space Group: P 1 21 1	R_factor 0.206 R_Free 0.245
crystal cell	length a length b length c angle alpha angle beta angle gamma 56.200 76.800 66.900 90.00 93.20 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	ACE	enzyme
related structures	by homologous chain: 1D00
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	The structural basis for the recognition of diverse receptor sequences by TRAF2., Ye H, Park YC, Kreishman M, Kieff E, Wu H, Mol Cell 1999 Sep;4(3):321-30. PMID:10518213

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (1czy.pdb1.gz) 87 Kb LPC: Ligand-Protein Contacts for 1CZY CSU: Contacts of Structural Units for 1CZY Likely Quarternary Molecular Structure file(s) for 1CZY Retrieve 1CZY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1CZY from S2C, [Save to disk]

View 1CZY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1CZY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1CZY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1czya2, region A:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1czya1, region A:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1czyb2, region B:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1czyb1, region B:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1czyc2, region C:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1czyc1, region C:350-501 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1czy_E] [1czy_C] [1czy_D] [1czy] [1czy_B] [1czy_A] SWISS-PROT database: [P03230] [Q12933] Domain organization of [LMP1_EBVB9] [TRAF2_HUMAN] by SWISSPFAM Domain found in 1CZY: [MATH ] by SMART

Other resources with information on 1CZY

Community annotation for 1CZY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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