1D0J	Apoptosis	date	Sep 10, 1999
title	Structure Of Tnf Receptor Associated Factor 2 In Complex Wit Peptide
authors	H.Ye, Y.C.Park, M.Kreishman, E.Kieff, H.Wu
compound		source
Molecule: Tumor Necrosis Factor Receptor Associated Protein Chain: A, B, C, D, E, F Fragment: Traf Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24d
Molecule: 4-1bb Ligand Receptor Chain: G, H, I, J, K Fragment: Traf2-Binding Sequence Engineered: Yes		Synthetic: Yes Other_details: This Peptide Was Chemically Synthesized. The Of This Peptide Naturally Occurs In Mouse (Mus Musculus)
symmetry	Space Group: C 1 2 1	R_factor 0.227 R_Free 0.270
crystal cell	length a length b length c angle alpha angle beta angle gamma 135.900 85.600 124.100 90.00 119.10 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	ACE	enzyme
related structures	by homologous chain: 1CZZ, 1QSC
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	The structural basis for the recognition of diverse receptor sequences by TRAF2., Ye H, Park YC, Kreishman M, Kieff E, Wu H, Mol Cell 1999 Sep;4(3):321-30. PMID:10518213

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk] Biological Unit Coordinates (1d0j.pdb1.gz) 83 Kb Biological Unit Coordinates (1d0j.pdb2.gz) 84 Kb Biological Unit Coordinates (1d0j.pdb3.gz) 164 Kb Biological Unit Coordinates (1d0j.pdb4.gz) 164 Kb LPC: Ligand-Protein Contacts for 1D0J CSU: Contacts of Structural Units for 1D0J Likely Quarternary Molecular Structure file(s) for 1D0J Retrieve 1D0J in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D0J from S2C, [Save to disk]

View 1D0J in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1D0J

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D0J, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1d0ja2, region A:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0ja1, region A:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1d0jb2, region B:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0jb1, region B:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1d0jc2, region C:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0jc1, region C:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1d0jd2, region D:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0jd1, region D:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1d0je2, region E:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0je1, region E:350-501 [Jmol] [rasmolscript] [script source]     - Domain d1d0jf2, region F:334-349 [Jmol] [rasmolscript] [script source]     - Domain d1d0jf1, region F:350-501 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d0j_B] [1d0j_I] [1d0j_C] [1d0j_D] [1d0j_H] [1d0j_E] [1d0j_J] [1d0j_A] [1d0j_G] [1d0j] [1d0j_K] [1d0j_F] SWISS-PROT database: [P20334] [Q12933] Domain organization of [TNR9_MOUSE] [TRAF2_HUMAN] by SWISSPFAM Domain found in 1D0J: [MATH ] by SMART

Other resources with information on 1D0J

Community annotation for 1D0J at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---