1D3R	CRYSTAL STRUCTURE OF TRIPLEX DNA	date
authors	Rhee, S., Han, Z.J., Liu, K., Miles, H.T.Todd., Davies, D.R.
compound		source
symmetry		R_factor R_Free 0.275
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.80
ligand	BRU	enzyme
Primary reference	Structure of a triple helical DNA with a triplex-duplex junction., Rhee S, Han Z, Liu K, Miles HT, Davies DR, Biochemistry. 1999 Dec 21;38(51):16810-5. PMID:10606513

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk] Biological Unit Coordinates (1d3r.pdb1.gz) 19 Kb LPC: Ligand-Protein Contacts for 1D3R CSU: Contacts of Structural Units for 1D3R Likely Quarternary Molecular Structure file(s) for 1D3R Retrieve 1D3R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1D3R from S2C, [Save to disk]

View 1D3R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1D3R

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1D3R, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1d3r] [1d3r_B] [1d3r_A] [1d3r_D] [1d3r_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 1D3R

Community annotation for 1D3R at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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