1D4M Virus date Oct 04, 1999
title The Crystal Structure Of Coxsackievirus A9 To 2.9 A Resoluti
authors E.Hendry, H.Hatanaka, E.Fry, M.Smyth, J.Tate, G.Stanway, J.Santti, M.Maaronen, T.Hyypia, D.Stuart
compound source
Molecule: Protein (Coxsackievirus A9)
Chain: 1
Fragment: Vp1
 Organism_scientific: Human Coxsackievirus A9
Organism_taxid: 12067

Molecule: Protein (Coxsackievirus A9)
Chain: 2
Fragment: Vp2
Organism_scientific: Human Coxsackievirus A9
Organism_taxid: 12067

Molecule: Protein (Coxsackievirus A9)
Chain: 3
Fragment: Vp3
Organism_scientific: Human Coxsackievirus A9
Organism_taxid: 12067

Molecule: Protein (Coxsackievirus A9)
Chain: 4
Fragment: Vp4
Organism_scientific: Human Coxsackievirus A9
Organism_taxid: 12067
symmetry Space Group: C 1 2 1
R_factor 0.169 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
487.300 358.100 305.700 90.00 128.10 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand MYR, W71 enzyme
related structures by homologous chain: 1EAH, 1H8T, 1R09
Gene
Ontology
ChainFunctionProcessComponent
1, 3, 2


4


Primary referenceThe crystal structure of coxsackievirus A9: new insights into the uncoating mechanisms of enteroviruses., Hendry E, Hatanaka H, Fry E, Smyth M, Tate J, Stanway G, Santti J, Maaronen M, Hyypia T, Stuart D, Structure Fold Des 1999 Dec 15;7(12):1527-38. PMID:10647183
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk]
  • Biological Unit Coordinates (1d4m.pdb1.gz) 8289 Kb
  • LPC: Ligand-Protein Contacts for 1D4M
  • CSU: Contacts of Structural Units for 1D4M
  • Likely Quarternary Molecular Structure file(s) for 1D4M
  • Retrieve 1D4M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D4M from S2C, [Save to disk]
    • View 1D4M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D4M
  • VIPERdb: visual, structural and computational analysis of 1D4M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D4M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d4m1_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d1d4m3_, region 3 [Jmol] [rasmolscript] [script source]
        - Domain d1d4m.1, region 4:,2 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d4m_2] [1d4m] [1d4m_1] [1d4m_3] [1d4m_4]
  • SWISS-PROT database: [P21404]
  • Domain organization of [POLG_CXA9] by SWISSPFAM
    • Other resources with information on 1D4M
  • Community annotation for 1D4M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science