1D5V Gene Regulation date Oct 12, 1999
title Solution Structure Of The Forkhead Domain Of The Adipocyte- Transcription Factor Freac-11 (S12)
authors M.J.P.Van Dongen, A.Cederberg, P.Carlsson, S.Enerback, M.Wikstro
compound source
Molecule: S12 Transcription Factor (Fkh-14)
Chain: A
Fragment: Dna-Binding Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Tissue: Adipose Tissue
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-11a
methodSolution NMR
related structures by homologous chain: 1JXS, 2HDC
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and dynamics of the DNA-binding domain of the adipocyte-transcription factor FREAC-11., van Dongen MJ, Cederberg A, Carlsson P, Enerback S, Wikstrom M, J Mol Biol 2000 Feb 18;296(2):351-9. PMID:10669593
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (728 Kb) [Save to disk]
  • Biological Unit Coordinates (1d5v.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1D5V
  • Original NMR restraints for 1D5V from PDB
  • Retrieve 1D5V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D5V from S2C, [Save to disk]
    • View 1D5V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D5V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D5V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1d5va_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d5v_A] [1d5v]
  • SWISS-PROT database: [Q99958]
  • Domain organization of [FOXC2_HUMAN] by SWISSPFAM
  • Domain found in 1D5V: [FH ] by SMART
    • Other resources with information on 1D5V
  • Community annotation for 1D5V at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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