1D6D Dna date Oct 13, 1999
title Solution Dna Structure Containing (A-A)-T Triads Interdigita Between A-T Base Pairs And Gggg Tetrads; Nmr, 8 Struct.
authors V.V.Kuryavyi, A.Kettani, W.Wang, R.Jones, D.J.Patel
compound source
Molecule: 5'-D(Apapgpgptptptptpapapgpg)-3'
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Human Telo Dna, Human Ig Superfamily Cytotoxic T-Lymphocyte-Associated Gene And 16s Rrna Of Henrica Niponica.
methodSolution NMR
Primary referenceA diamond-shaped zipper-like DNA architecture containing triads sandwiched between mismatches and tetrads., Kuryavyi V, Kettani A, Wang W, Jones R, Patel DJ, J Mol Biol 2000 Jan 21;295(3):455-69. PMID:10623538
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (1d6d.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1D6D
  • Original NMR restraints for 1D6D from PDB
  • Retrieve 1D6D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1D6D from S2C, [Save to disk]
    • View 1D6D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1D6D
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1D6D, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1d6d_A] [1d6d_B] [1d6d]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1D6D
  • Community annotation for 1D6D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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