1DAU Dna date Jan 21, 1998
title Analog Of Dickerson-Drew Dna Dodecamer With 6'-Alpha-Methyl Carbocyclic Thymidines, Nmr, Minimized Average Structure
authors A.Denisov, S.Bekiroglu, T.Maltseva, A.Sandstrom, K.H.Altmann, M. J.Chattopadhyaya
compound source
Molecule: Dna (5'-D(Cpgpcpgpapap(T32)P(T32)Pcpgp
Chain: A, B
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
ligand T32 enzyme
Primary referenceThe solution conformation of a carbocyclic analog of the Dickerson-Drew dodecamer: comparison with its own X-ray structure and that of the NMR structure of the native counterpart., Denisov AY, Zamaratski EV, Maltseva TV, Sandstrom A, Bekiroglu S, Altmann KH, Egli M, Chattopadhyaya J, J Biomol Struct Dyn 1998 Dec;16(3):547-68. PMID:10052613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (1dau.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1DAU
  • CSU: Contacts of Structural Units for 1DAU
  • Retrieve 1DAU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DAU from S2C, [Save to disk]
    • View 1DAU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DAU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DAU, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dau_A] [1dau_B] [1dau]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1DAU
  • Community annotation for 1DAU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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