1DBJ Immunoglobulin date Aug 24, 1993
title Molecular Basis Of Cross-Reactivity And The Limits Of Antibody-Antigen Complementarity
authors J.H.Arevalo, I.A.Wilson
compound source
Molecule: Igg1-Kappa Db3 Fab (Light Chain)
Chain: L
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell: Hybridoma

Molecule: Igg1-Kappa Db3 Fab (Heavy Chain)
Chain: H
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Cell: Hybridoma
symmetry Space Group: P 64 2 2
R_factor 0.214 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
134.760 134.760 124.210 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand AE2 enzyme
related structures by homologous chain: 1GHF, 2LVE, 4FAB
Primary referenceMolecular basis of crossreactivity and the limits of antibody-antigen complementarity., Arevalo JH, Taussig MJ, Wilson IA, Nature 1993 Oct 28;365(6449):859-63. PMID:8413674
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1dbj.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 1DBJ
  • CSU: Contacts of Structural Units for 1DBJ
  • Likely Quarternary Molecular Structure file(s) for 1DBJ
  • Retrieve 1DBJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DBJ from S2C, [Save to disk]
    • View 1DBJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DBJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DBJ, from MSDmotif at EBI
  • Genome occurence of 1DBJ's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dbjh1, region H:1-112 [Jmol] [rasmolscript] [script source]
        - Domain d1dbjh2, region H:113-228 [Jmol] [rasmolscript] [script source]
        - Domain d1dbjl1, region L:1-107 [Jmol] [rasmolscript] [script source]
        - Domain d1dbjl2, region L:108-211 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dbj] [1dbj_L] [1dbj_H]
  • SWISS-PROT database: [P01868]
  • Domain organization of [IGHG1_MOUSE] by SWISSPFAM
  • Domains found in 1DBJ: [IG_like] [IGv ] by SMART
    • Other resources with information on 1DBJ
  • Community annotation for 1DBJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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