1DF6 Plant Protein date Nov 17, 1999
title 1h Nmr Solution Structure Of Cycloviolacin O1
authors D.J.Craik, N.L.Daly, T.Bond, C.Waine
compound source
Molecule: Cycloviolacin O1
Chain: A
Other_details: Cyclic Cystine Knot Polypeptide
 Organism_scientific: Viola Odorata
Organism_taxid: 97441
Other_details: Leaves, Stems And Flowers
methodSolution NMR
related structures by homologous chain: 1NBJ, 1VB8
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referencePlant cyclotides: A unique family of cyclic and knotted proteins that defines the cyclic cystine knot structural motif., Craik DJ, Daly NL, Bond T, Waine C, J Mol Biol 1999 Dec 17;294(5):1327-36. PMID:10600388
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (1df6.pdb1.gz) 7 Kb
  • CSU: Contacts of Structural Units for 1DF6
  • Original NMR restraints for 1DF6 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1DF6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DF6 from S2C, [Save to disk]
    • View 1DF6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DF6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DF6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1df6a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1df6] [1df6_A]
  • SWISS-PROT database: [P82230]
  • Domain organization of [CYO1_VIOOD] by SWISSPFAM
    • Other resources with information on 1DF6
  • Community annotation for 1DF6 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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