1DGJ Oxidoreductase date Nov 24, 1999
title Crystal Structure Of The Aldehyde Oxidoreductase From Desulf Desulfuricans Atcc 27774
authors J.M.Rebelo, S.Macieira, J.M.Dias, R.Huber, M.J.Romao
compound source
Molecule: Aldehyde Oxidoreductase
Chain: A
Ec: 1.2.-.-
Engineered: Yes
 Organism_scientific: Desulfovibrio Desulfuricans
Organism_taxid: 876
Atcc: 27774
Expression_system: Bacteria
Expression_system_common: Eubacteria
Expression_system_taxid: 2
symmetry Space Group: P 61 2 2
R_factor 0.164 R_Free 0.224
crystal
cell
length a length b length c angle alpha angle beta angle gamma
156.639 156.639 177.149 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand 2MO, FES, MCN enzyme Oxidoreductase E.C.1.2 BRENDA
related structures by homologous chain: 1SIJ
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceGene sequence and crystal structure of the aldehyde oxidoreductase from Desulfovibrio desulfuricans ATCC 27774., Rebelo J, Macieira S, Dias JM, Huber R, Ascenso CS, Rusnak F, Moura JJ, Moura I, Romao MJ, J Mol Biol 2000 Mar 17;297(1):135-46. PMID:10704312
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]
  • Biological Unit Coordinates (1dgj.pdb1.gz) 142 Kb
  • LPC: Ligand-Protein Contacts for 1DGJ
  • CSU: Contacts of Structural Units for 1DGJ
  • Likely Quarternary Molecular Structure file(s) for 1DGJ
  • Retrieve 1DGJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DGJ from S2C, [Save to disk]
    • View 1DGJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DGJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DGJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dgja2, region A:1-80 [Jmol] [rasmolscript] [script source]
        - Domain d1dgja3, region A:194-310 [Jmol] [rasmolscript] [script source]
        - Domain d1dgja4, region A:311-906 [Jmol] [rasmolscript] [script source]
        - Domain d1dgja1, region A:81-193 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dgj] [1dgj_A]
  • SWISS-PROT database: [Q9REC4]
  • Domain organization of [Q9REC4_DESDE] by SWISSPFAM
  • Domain found in 1DGJ: [Ald_Xan_dh_C ] by SMART
    • Other resources with information on 1DGJ
  • Community annotation for 1DGJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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