1DK5 Metal Binding Protein date Dec 06, 1999
title Crystal Structure Of Annexin 24(Ca32) From Capsicum Annuum
authors A.Hofmann, J.Proust, A.Dorowski, R.Schantz, R.Huber
compound source
Molecule: Annexin 24(Ca32)
Chain: A, B
Engineered: Yes
Other_details: N-Terminal Fusion Mahhhhhh
 Organism_scientific: Capsicum Annuum
Organism_taxid: 4072
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector: Prset_5d
symmetry Space Group: P 32 2 1
R_factor 0.216 R_Free 0.316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.760 96.760 173.390 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand SO4 enzyme
related structures by homologous chain: 1YCN
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAnnexin 24 from Capsicum annuum. X-ray structure and biochemical characterization., Hofmann A, Proust J, Dorowski A, Schantz R, Huber R, J Biol Chem 2000 Mar 17;275(11):8072-82. PMID:10713128
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk]
  • Biological Unit Coordinates (1dk5.pdb1.gz) 56 Kb
  • Biological Unit Coordinates (1dk5.pdb2.gz) 56 Kb
  • Biological Unit Coordinates (1dk5.pdb3.gz) 110 Kb
  • Biological Unit Coordinates (1dk5.pdb4.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 1DK5
  • CSU: Contacts of Structural Units for 1DK5
  • Likely Quarternary Molecular Structure file(s) for 1DK5
  • Structure Factors (173 Kb)
  • Retrieve 1DK5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DK5 from S2C, [Save to disk]
  • Re-refined 1dk5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1DK5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DK5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DK5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dk5a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dk5b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dk5_B] [1dk5_A] [1dk5]
  • SWISS-PROT database: [Q42657]
  • Domain organization of [Q42657_CAPAN] by SWISSPFAM
  • Domain found in 1DK5: [ANX ] by SMART
    • Other resources with information on 1DK5
  • Community annotation for 1DK5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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