1DKC Antifungal Protein date Dec 07, 1999
title Solution Structure Of Pafp-S, An Antifungal Peptide From The Phytolacca Americana
authors D.C.Wang, G.H.Gao, F.Shao, J.X.Dai, J.F.Wang
compound source
Molecule: Antifungal Peptide
Chain: A
Synonym: Pafp-S
 Organism_scientific: Phytolacca Americana
Organism_common: American Pokeweed
Organism_taxid: 3527
Other_details: Seed
methodSolution NMR
note 1DKC is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure of PAFP-S: a new knottin-type antifungal peptide from the seeds of Phytolacca americana., Gao GH, Liu W, Dai JX, Wang JF, Hu Z, Zhang Y, Wang DC, Biochemistry 2001 Sep 18;40(37):10973-8. PMID:11551192
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (1dkc.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1DKC
  • Original NMR restraints for 1DKC from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1DKC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DKC from S2C, [Save to disk]
    • View 1DKC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DKC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DKC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dkca_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dkc_A] [1dkc]
  • SWISS-PROT database: [P81418]
  • Domain organization of [PAFP_PHYAM] by SWISSPFAM
    • Other resources with information on 1DKC
  • Community annotation for 1DKC at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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