1DLP Sugar Binding Protein date Dec 11, 1999
title Structural Characterization Of The Native Fetuin-Binding Pro Scilla Campanulata Agglutinin (Scafet): A Novel Two-Domain
authors L.M.Wright, C.D.Reynolds, P.J.Rizkallah, A.K.Allen, E.J.M.Vandam M.J.Donovan, W.J.Peumans
compound source
Molecule: Lectin Scafet Precursor
Chain: A, B, C, D, E, F
 Organism_scientific: Hyacinthoides Hispanica
Organism_taxid: 81759
Other_details: Protein Was Extracted From The Bulbs Of This
symmetry Space Group: C 1 2 1
R_factor 0.189 R_Free 0.293
crystal
cell
length a length b length c angle alpha angle beta angle gamma
277.940 164.100 53.600 90.00 95.38 90.00
method X-Ray Diffractionresolution 3.30 Å
Primary referenceStructural characterisation of the native fetuin-binding protein Scilla campanulata agglutinin: a novel two-domain lectin., Wright LM, Reynolds CD, Rizkallah PJ, Allen AK, Van Damme EJ, Donovan MJ, Peumans WJ, FEBS Lett 2000 Feb 18;468(1):19-22. PMID:10683433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (220 Kb) [Save to disk]
  • Biological Unit Coordinates (1dlp.pdb1.gz) 211 Kb
  • CSU: Contacts of Structural Units for 1DLP
  • Likely Quarternary Molecular Structure file(s) for 1DLP
  • Retrieve 1DLP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DLP from S2C, [Save to disk]
    • View 1DLP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DLP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DLP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dlpa1, region A:1-115 [Jmol] [rasmolscript] [script source]
        - Domain d1dlpa2, region A:116-235 [Jmol] [rasmolscript] [script source]
        - Domain d1dlpb1, region B:1-113 [Jmol] [rasmolscript] [script source]
        - Domain d1dlpb2, region B:123-235 [Jmol] [rasmolscript] [script source]
        - Domain d1dlpc1, region C:1-115 [Jmol] [rasmolscript] [script source]
        - Domain d1dlpc2, region C:116-236 [Jmol] [rasmolscript] [script source]
        - Domain d1dlpd1, region D:1-114 [Jmol] [rasmolscript] [script source]
        - Domain d1dlpd2, region D:123-235 [Jmol] [rasmolscript] [script source]
        - Domain d1dlpe1, region E:1-115 [Jmol] [rasmolscript] [script source]
        - Domain d1dlpe2, region E:116-235 [Jmol] [rasmolscript] [script source]
        - Domain d1dlpf1, region F:1-111 [Jmol] [rasmolscript] [script source]
        - Domain d1dlpf2, region F:124-235 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dlp_E] [1dlp_B] [1dlp_C] [1dlp_D] [1dlp] [1dlp_F] [1dlp_A]
  • SWISS-PROT database: [Q9ZP48]
  • Domain organization of [Q9ZP48_HYAHI] by SWISSPFAM
  • Domain found in 1DLP: [B_lectin ] by SMART
    • Other resources with information on 1DLP
  • Community annotation for 1DLP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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