1DM9 Structural Genomics date Dec 14, 1999
title Heat Shock Protein 15 Kd
authors B.L.Staker, P.Korber, J.C.A.Bardwell, M.A.Saper
compound source
Molecule: Hypothetical 15.5 Kd Protein In Mrca-Pcka Interge Region;
Chain: A, B
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.226 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.070 67.930 41.010 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO4 enzyme
note 1DM9 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of Hsp15 reveals a novel RNA-binding motif., Staker BL, Korber P, Bardwell JC, Saper MA, EMBO J 2000 Feb 15;19(4):749-57. PMID:10675344
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1dm9.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (1dm9.pdb2.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1DM9
  • CSU: Contacts of Structural Units for 1DM9
  • Likely Quarternary Molecular Structure file(s) for 1DM9
  • Retrieve 1DM9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DM9 from S2C, [Save to disk]
    • View 1DM9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DM9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DM9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dm9a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1dm9b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dm9_B] [1dm9_A] [1dm9]
  • SWISS-PROT database: [P0ACG8]
  • Domain organization of [HSLR_ECOLI] by SWISSPFAM
  • Domain found in 1DM9: [S4 ] by SMART
    • Other resources with information on 1DM9
  • Community annotation for 1DM9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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