1DOJ	Hydrolase Hydrolase Inhibitor	date	Dec 21, 1999
title	Crystal Structure Of Human Alpha-Thrombinrwj-51438 Complex
authors	R.Recacha, M.J.Costanzo, B.E.Maryanoff, M.Carson, L.Delucas, D.Chattopadhyay
compound		source
Molecule: Alpha-Thrombin Chain: A Ec: 3.4.21.5		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cellular_location: Plasma
Molecule: Hirugen Chain: B Fragment: Fragment Of Hirudin Engineered: Yes		Synthetic: Yes Other_details: Hirugen, Comes From Hirudin
symmetry	Space Group: P 21 21 2	R_factor 0.174 R_Free 0.217
crystal cell	length a length b length c angle alpha angle beta angle gamma 62.982 117.521 47.989 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	1Z0, NA, NAG, TYS BindingDB	enzyme	Hydrolase E.C.3.4.21.5 BRENDA
related structures	by homologous chain: 1GJ5, 1OYT
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of human alpha-thrombin complexed with RWJ-51438 at 1.7 A: unusual perturbation of the 60A-60I insertion loop., Recacha R, Costanzo MJ, Maryanoff BE, Carson M, DeLucas L, Chattopadhyay D, Acta Crystallogr D Biol Crystallogr 2000 Nov;56 ( Pt 11):1395-400. PMID:11053836

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk] Biological Unit Coordinates (1doj.pdb1.gz) 58 Kb LPC: Ligand-Protein Contacts for 1DOJ CSU: Contacts of Structural Units for 1DOJ Likely Quarternary Molecular Structure file(s) for 1DOJ Structure Factors (362 Kb) Retrieve 1DOJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DOJ from S2C, [Save to disk] Re-refined 1doj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DOJ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1doja_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1doj] [1doj_B] [1doj_A] [1doj_I] SWISS-PROT database: [P00734] Domain organization of [THRB_HUMAN] by SWISSPFAM Domain found in 1DOJ: [Tryp_SPc ] by SMART

Other resources with information on 1DOJ

Community annotation for 1DOJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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