1DQH CRYSTAL STRUCTURE OF HELIX II OF THE X. LAEVIS SOMATIC 5S RRNA WITH A CYTOSINE BULGE IN TWO CONFORMATIONS date
authors Xiong, Y., Sundaralingam, M.
compound source
symmetry
R_factor
R_Free 0.2430000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
Primary referenceTwo crystal forms of helix II of Xenopus laevis 5S rRNA with a cytosine bulge., Xiong Y, Sundaralingam M, RNA 2000 Sep;6(9):1316-24. PMID:10999608
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (12 Kb) [Save to disk]
  • Biological Unit Coordinates (1dqh.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 1DQH
  • Likely Quarternary Molecular Structure file(s) for 1DQH
  • Structure Factors (43 Kb)
  • Retrieve 1DQH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DQH from S2C, [Save to disk]
  • Re-refined 1dqh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1DQH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DQH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DQH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dqh] [1dqh_B] [1dqh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1DQH
  • Community annotation for 1DQH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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