1DSI Dna date Jul 29, 1998
title Solution Structure Of A Duocarmycin Sa-Indole-Alkylated Dna
authors J.R.Schnell, R.R.Ketchem, D.L.Boger, W.J.Chazin
compound source
Molecule: Dna (5'-D(Gpapcptpapaptptpgpapc)-3')
Chain: A
Engineered: Yes
Other_details: Minor Groove Bound Duocarmycin Sa-Indole
 Synthetic: Yes

Molecule: Dna (5'-D(Gptpcpapaptptpapgptpc)-3')
Chain: B
Engineered: Yes
Other_details: Minor Groove Bound Duocarmycin Sa-Indole
Synthetic: Yes
methodSolution NMR
ligand DSI enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (253 Kb) [Save to disk]
  • Biological Unit Coordinates (1dsi.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1DSI
  • CSU: Contacts of Structural Units for 1DSI
  • Retrieve 1DSI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DSI from S2C, [Save to disk]
    • View 1DSI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DSI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DSI, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dsi_B] [1dsi_A] [1dsi]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1DSI
  • Community annotation for 1DSI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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