1DSY	Transferase	date	Jan 10, 2000
title	C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ Phosphatidylserine
authors	N.Verdaguer, S.Corbalan-Garcia, W.F.Ochoa, I.Fita, J.C.Gomez-Fer
compound		source
Molecule: Protein Kinase C, Alpha Type Chain: A Fragment: Calciumphospholipid Binding Domain Ec: 2.7.1.- Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector: Pet28c(+)
symmetry	Space Group: P 32 2 1	R_factor 0.195 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.800 58.800 91.700 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.60 Å
ligand	CA, PO4, PSF	enzyme	Transferase E.C.2.7.1 BRENDA
related structures	by homologous chain: 1A25
Gene Ontology	Chain Function Process Component A
Primary reference	Ca(2+) bridges the C2 membrane-binding domain of protein kinase Calpha directly to phosphatidylserine., Verdaguer N, Corbalan-Garcia S, Ochoa WF, Fita I, Gomez-Fernandez JC, EMBO J 1999 Nov 15;18(22):6329-38. PMID:10562545

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk] Biological Unit Coordinates (1dsy.pdb1.gz) 25 Kb LPC: Ligand-Protein Contacts for 1DSY CSU: Contacts of Structural Units for 1DSY Likely Quarternary Molecular Structure file(s) for 1DSY Retrieve 1DSY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DSY from S2C, [Save to disk]

View 1DSY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DSY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DSY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dsya_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dsy_A] [1dsy] SWISS-PROT database: [P05696] Domain organization of [KPCA_RAT] by SWISSPFAM Domain found in 1DSY: [C2 ] by SMART

Other resources with information on 1DSY

Community annotation for 1DSY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---