1DUW Electron Transport date Jan 19, 2000
title Structure Of Nonaheme Cytochrome C
authors S.Umhau, G.Fritz, K.Diederichs, J.Breed, P.M.Kroneck, W.Welte
compound source
Molecule: Nonaheme Cytochrome C
Chain: A
 Organism_scientific: Desulfovibrio Desulfuricans
Organism_taxid: 876
Strain: Essex6
Atcc: 29577
Other_details: Desufovibrio Desulfuricans Strain: Essex6 Co Atcc 29577
symmetry Space Group: P 41 21 2
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.400 55.400 236.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.89 Å
ligand GOL, HEC enzyme
related structures by homologous chain: 19HC, 1OFY
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceThree-dimensional structure of the nonaheme cytochrome c from Desulfovibrio desulfuricans Essex in the Fe(III) state at 1.89 A resolution., Umhau S, Fritz G, Diederichs K, Breed J, Welte W, Kroneck PM, Biochemistry 2001 Feb 6;40(5):1308-16. PMID:11170457
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (1duw.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (1duw.pdb2.gz) 121 Kb
  • LPC: Ligand-Protein Contacts for 1DUW
  • CSU: Contacts of Structural Units for 1DUW
  • Likely Quarternary Molecular Structure file(s) for 1DUW
  • Structure Factors (320 Kb)
  • Retrieve 1DUW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DUW from S2C, [Save to disk]
  • Re-refined 1duw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1DUW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DUW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1DUW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1duwa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1duw_A] [1duw]
  • SWISS-PROT database: [Q9XCU0]
  • Domain organization of [Q9XCU0_DESDE] by SWISSPFAM
    • Other resources with information on 1DUW
  • Community annotation for 1DUW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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