1DVR	Transferase (Phosphotransferase)	date	Dec 14, 1995
title	Structure Of A Mutant Adenylate Kinase Ligated With An Atp-A Showing Domain Closure Over Atp
authors	G.J.Schlauderer, G.E.Schulz
compound		source
Molecule: Adenylate Kinase Chain: A, B Synonym: Atp:Amp-Phosphotransferase, Myokinase Ec: 2.7.4.3 Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Cellular_location: Cytosol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Hb101 Expression_system_plasmid: Puakyi
symmetry	Space Group: P 21 21 21	R_factor 0.191 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.800 73.400 118.800 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.36 Å
ligand	ATF	enzyme	Transferase E.C.2.7.4.3 BRENDA
related structures	by homologous chain: 3AKY
Gene Ontology	Chain Function Process Component A, B adenylate kinase activity
Primary reference	Structure of a mutant adenylate kinase ligated with an ATP-analogue showing domain closure over ATP., Schlauderer GJ, Proba K, Schulz GE, J Mol Biol 1996 Feb 23;256(2):223-7. PMID:8594191

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (1dvr.pdb1.gz) 73 Kb LPC: Ligand-Protein Contacts for 1DVR CSU: Contacts of Structural Units for 1DVR Likely Quarternary Molecular Structure file(s) for 1DVR Structure Factors (92 Kb) Retrieve 1DVR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1DVR from S2C, [Save to disk] Re-refined 1dvr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1DVR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1DVR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1DVR, from MSDmotif at EBI Genome occurence of 1DVR's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1dvra1, region A:1-130,A:169-220 [Jmol] [rasmolscript] [script source]     - Domain d1dvra2, region A:131-168 [Jmol] [rasmolscript] [script source]     - Domain d1dvrb1, region B:1-130,B:169-220 [Jmol] [rasmolscript] [script source]     - Domain d1dvrb2, region B:131-168 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1dvr] [1dvr_B] [1dvr_A] SWISS-PROT database: [P07170] Domain organization of [KAD1_YEAST] by SWISSPFAM

Other resources with information on 1DVR

Community annotation for 1DVR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Adenylate Kinase (the movie) Images from IMB Jena Image Library of Biological Macromolecules.

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