1DY9 date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 2ZF, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B, A


Primary referenceInhibition of the hepatitis C virus NS3/4A protease. The crystal structures of two protease-inhibitor complexes., Di Marco S, Rizzi M, Volpari C, Walsh MA, Narjes F, Colarusso S, De Francesco R, Matassa VG, Sollazzo M, J Biol Chem 2000 Mar 10;275(10):7152-7. PMID:10702283
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1dy9.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (1dy9.pdb2.gz) 31 Kb
  • LPC: Ligand-Protein Contacts for 1DY9
  • CSU: Contacts of Structural Units for 1DY9
  • Likely Quarternary Molecular Structure file(s) for 1DY9
  • Structure Factors (172 Kb)
  • Retrieve 1DY9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DY9 from S2C, [Save to disk]
  • Re-refined 1dy9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1DY9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1DY9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DY9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dy9.1, region A:,C [Jmol] [rasmolscript] [script source]
        - Domain d1dy9.2, region B:,D [Jmol] [rasmolscript] [script source]
  • Fold representative 1dy9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dy9] [1dy9_A] [1dy9_B] [1dy9_C] [1dy9_D] [1dy9_E] [1dy9_F]
  • SWISS-PROT database: [P26662]
  • Domain organization of [POLG_HCVJA] by SWISSPFAM
    • Other resources with information on 1DY9
  • Community annotation for 1DY9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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