1E3U Beta-Lactamase date Jun 23, 2000
title Mad Structure Of Oxa10 Class D Beta-Lactamase
authors L.Maveyraud, D.Golemi, L.P.Kotra, S.Tranier, S.Vakulenko, S.Mobas J.P.Samama
compound source
Molecule: Beta-Lactamase Oxa-10
Chain: A, B, C
Ec: 3.5.2.6
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_cellular_location: Excreted
Expression_system_vector_type: Pet24a

Molecule: Beta-Lactamase Oxa-10
Chain: D
Ec: 3.5.2.6
Engineered: Yes

Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_cellular_location: Excreted
Expression_system_vector_type: Pet24a
symmetry Space Group: P 1 21 1
R_factor 0.181 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.530 82.940 101.420 90.00 95.03 90.00
method X-Ray Diffractionresolution 1.66 Å
ligand AUC, EDO, SO4 enzyme Hydrolase E.C.3.5.2.6 BRENDA
related structures by homologous chain: 1K4F, 1K54
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceInsights into class D beta-lactamases are revealed by the crystal structure of the OXA10 enzyme from Pseudomonas aeruginosa., Maveyraud L, Golemi D, Kotra LP, Tranier S, Vakulenko S, Mobashery S, Samama JP, Structure Fold Des 2000 Dec 15;8(12):1289-98. PMID:11188693
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (347 Kb) [Save to disk]
  • Biological Unit Coordinates (1e3u.pdb1.gz) 171 Kb
  • Biological Unit Coordinates (1e3u.pdb2.gz) 174 Kb
  • LPC: Ligand-Protein Contacts for 1E3U
  • CSU: Contacts of Structural Units for 1E3U
  • Likely Quarternary Molecular Structure file(s) for 1E3U
  • Structure Factors (915 Kb)
  • Retrieve 1E3U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E3U from S2C, [Save to disk]
  • Re-refined 1e3u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E3U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E3U
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E3U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e3ua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e3ub_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1e3uc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1e3ud_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e3u_C] [1e3u_A] [1e3u_D] [1e3u] [1e3u_B]
  • SWISS-PROT database: [P14489]
  • Domain organization of [BLO10_PSEAE] by SWISSPFAM
  • Other resources with information on 1E3U
  • Community annotation for 1E3U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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