1E5C Hydrolase date Jul 24, 2000
title Internal Xylan Binding Domain From C. Fimi Xyn10a, R262g Mut
authors P.J.Simpson, X.Hefang, D.N.Bolam, H.J.Gilbert, M.P.Williamson
compound source
Molecule: Xylanase D
Chain: A
Fragment: Xylan Binding Domain 1
Synonym: Xbd1,Endo-1,4-Beta-Xylanase D
Ec: 3.2.1.8
Engineered: Yes
Mutation: Yes
 Organism_scientific: Cellulomonas Fimi
Organism_taxid: 1708
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm83
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.2.1.8 BRENDA
related structures by homologous chain: 1E5B, 1HEJ
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structural basis for the ligand specificity of family 2 carbohydrate-binding modules., Simpson PJ, Xie H, Bolam DN, Gilbert HJ, Williamson MP, J Biol Chem 2000 Dec 29;275(52):41137-42. PMID:10973978
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (1e5c.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1E5C
  • Original NMR restraints for 1E5C from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1E5C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E5C from S2C, [Save to disk]
    • View 1E5C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1E5C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E5C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e5ca_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e5c_A] [1e5c]
  • SWISS-PROT database: [P54865]
  • Domain organization of [XYND_CELFI] by SWISSPFAM
  • Domain found in 1E5C: [CBD_II ] by SMART
    • Other resources with information on 1E5C
  • Community annotation for 1E5C at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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