1E6E Oxidoreductase date Aug 15, 2000
title Adrenodoxin Reductaseadrenodoxin Complex Of Mitochondrial P Systems
authors J.J.Mueller, A.Lapko, G.Bourenkov, K.Ruckpaul, U.Heinemann
compound source
Molecule: Nadph\:Adrenodoxin Oxidoreductase
Chain: A, C
Synonym: Ar, Adrenodoxin Reductase, Ferredoxin--Nadp(+) Red Ferredoxin Reductase, Adr, Adrenodoxin Reductase;
Ec: 1.18.1.2, 1.18.1.6
Engineered: Yes
Other_details: Covalent Crosslink Between Lys27 Of Adr And Adx;
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Adrenal Gland
Tissue: Steroidogenic Tissues
Cell: Mitochondrion
Organelle: Mitochondrial Matrix
Cellular_location: Attached To Inner Mitochondrial Membrane
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pbar1607

Molecule: Adrenodoxin
Chain: B, D
Synonym: Adrenal Ferredoxin, Ferredoxin-1, Hepato-Ferredoxi Drenodoxin;
Engineered: Yes
Mutation: Yes
Other_details: Covalent Crosslink Between Lys27 Of Adr And Adx

Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Organ: Adrenal Gland
Tissue: Steroidogenic Tissues
Cell: Mitochondrion
Organelle: Mitochondrial Matrix
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Pkkhc, Pmixt
symmetry Space Group: P 65 2 2
R_factor 0.222 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.210 92.210 607.850 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand FAD, FES, SO4 enzyme Oxidoreductase E.C.1.18.1.2 BRENDA
note 1E6E (Molecule of the Month:pdb82)
related structures by homologous chain: 1AYF, 1CJE, 1E1L, 1E1N
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceAdrenodoxin reductase-adrenodoxin complex structure suggests electron transfer path in steroid biosynthesis., Muller JJ, Lapko A, Bourenkov G, Ruckpaul K, Heinemann U, J Biol Chem. 2001 Jan 26;276(4):2786-9. Epub 2000 Oct 25. PMID:11053423
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (189 Kb) [Save to disk]
  • Biological Unit Coordinates (1e6e.pdb1.gz) 94 Kb
  • Biological Unit Coordinates (1e6e.pdb2.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 1E6E
  • CSU: Contacts of Structural Units for 1E6E
  • Likely Quarternary Molecular Structure file(s) for 1E6E
  • Structure Factors (452 Kb)
  • Retrieve 1E6E in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E6E from S2C, [Save to disk]
  • Re-refined 1e6e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E6E in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E6E
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E6E, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e6ea1, region A:107-331 [Jmol] [rasmolscript] [script source]
        - Domain d1e6ea2, region A:4-106,A:332-460 [Jmol] [rasmolscript] [script source]
        - Domain d1e6eb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1e6ec1, region C:107-331 [Jmol] [rasmolscript] [script source]
        - Domain d1e6ec2, region C:5-106,C:332-460 [Jmol] [rasmolscript] [script source]
        - Domain d1e6ed_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e6e_C] [1e6e_B] [1e6e_D] [1e6e] [1e6e_A]
  • SWISS-PROT database: [P08165] [P00257]
  • Domain organization of [ADRO_BOVIN] [ADX_BOVIN] by SWISSPFAM
  • Other resources with information on 1E6E
  • Community annotation for 1E6E at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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