1E8Q Cellulose Docking Domain date Sep 28, 2000
title Characterisation Of The Cellulose Docking Domain From Piromy
authors S.Raghothama, R.Y.Eberhardt, P.White, G.P.Hazlewood, H.J.Gilbert P.J.Simpson, M.P.Williamson
compound source
Molecule: Endoglucanase 45a
Chain: A
Fragment: Cellulose Docking Domain
Synonym: Dockerin
Engineered: Yes
Organism_scientific: Piromyces Equi
Organism_taxid: 99929
Gene: Cel45a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex
methodSolution NMR
related structures by homologous chain: 1E8P
Primary referenceCharacterization of a cellulosome dockerin domain from the anaerobic fungus Piromyces equi., Raghothama S, Eberhardt RY, Simpson P, Wigelsworth D, White P, Hazlewood GP, Nagy T, Gilbert HJ, Williamson MP, Nat Struct Biol 2001 Sep;8(9):775-8. PMID:11524680
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (1e8q.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1E8Q
  • Original NMR restraints for 1E8Q from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1E8Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E8Q from S2C, [Save to disk]
  • View 1E8Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E8Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E8Q, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e8qa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e8q_A] [1e8q]
  • SWISS-PROT database: [Q9P868]
  • Domain organization of [Q9P868_PIREQ] by SWISSPFAM
  • Other resources with information on 1E8Q
  • Community annotation for 1E8Q at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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