1EBQ Rna date Mar 20, 1997
title Structure Of Rna (5'-Ggugggcgcagcuucggcugcgguaccac-3'), Nmr, Structures
authors R.D.Peterson, J.Feigon
compound source
Molecule: Hiv-1 Rev Responsive Element Rna
Chain: A
Engineered: Yes
 Synthetic: Yes
methodSolution NMR
Primary referenceStructural change in Rev responsive element RNA of HIV-1 on binding Rev peptide., Peterson RD, Feigon J, J Mol Biol 1996 Dec 20;264(5):863-77. PMID:9000617
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (1ebq.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1EBQ
  • Retrieve 1EBQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EBQ from S2C, [Save to disk]
    • View 1EBQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1EBQ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EBQ, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ebq] [1ebq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1EBQ
  • Community annotation for 1EBQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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