1ED0 Toxin date Jan 26, 2000
title Nmr Structural Determination Of Viscotoxin A3 From Viscum Al
authors S.Romagnoli, R.Ugolini, F.Fogolari, G.Schaller, K.Urech, M.Gianna L.Ragona, H.Molinari
compound source
Molecule: Viscotoxin A3
Chain: A
 Organism_scientific: Viscum Album
Organism_common: European Mistletoe
Organism_taxid: 3972
methodSolution NMR
related structures by homologous chain: 1OKH, 1ORL
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structural determination of viscotoxin A3 from Viscum album L., Romagnoli S, Ugolini R, Fogolari F, Schaller G, Urech K, Giannattasio M, Ragona L, Molinari H, Biochem J 2000 Sep 1;350 Pt 2:569-77. PMID:10947973
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (1ed0.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1ED0
  • Original NMR restraints for 1ED0 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1ED0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ED0 from S2C, [Save to disk]
    • View 1ED0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ED0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ED0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ed0a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ed0] [1ed0_A]
  • SWISS-PROT database: [P01538]
  • Domain organization of [THN3_VISAL] by SWISSPFAM
    • Other resources with information on 1ED0
  • Community annotation for 1ED0 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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